Fasta_Dupicate_Header

A simple, self-explanatory matlab code to identify duplicate headers in fasta files.

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%Simple matlab code to check for the duplicate header in fasta files
%Store the size of header -> unique(header) ->size of new header
%Copy the Table data in excel and compare the two values
clear; clc;
tic;
Path = 'Drive\Path\FileName';%
FileList = dir(Path);
[rFL, cFL] = size(FileList); 
for i = 3:rFL %i of 1 & 2 are . & .. respectively
    Fas_Fname{i-2,1} = FileList(i).name; %FileList is a structure
end
[rFas,cFas] = size(Fas_Fname);

for i = 1:rFas
    clear Header Seq Old_Header Unik_header
    OpenFile = cell2mat(strcat(Path,Fas_Fname(i)));
    [Header, Seq] = fastaread(OpenFile);[rH,cH] = size(Header);
    Old_Header = length(Header);
    Unik_header = length(unique(Header));
    Table{i,1} = Fas_Fname(i);
    Table{i,2} = num2str(Old_Header);
    Table{i,3} = num2str(Unik_header);
    fprintf('Finished %d\t of ', i);
    fprintf('%d\n',rFas);
end
toc;

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